get_angio_score: Calculates Angiogenesis score
In korkutlab/imogimap: What the Package Does (One Line, Title Case)
View source: R/get_angio_score.R
get_angio_score R Documentation
Calculates Angiogenesis score
Description
Calculates Angiogenesis score
Usage
get_angio_score(pdf)
Arguments
pdf
A numeric data frame or matrix with samples as columns and gene/proteins as rows.
Details
The angiogenesis score is defined as mean value of gene expressions in AG_gene_list. Scores are mean-centered and normalized by standard deviation based on distribution of scores in all samples.
Value
a dataframe of Angiogenesis scores for each sample
Examples
get_angio_score(pdf=sample_mRNA_data)
korkutlab/imogimap documentation built on March 17, 2023, 8:22 a.m.
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View source: R/get_angio_score.R
| get_angio_score | R Documentation |
Calculates Angiogenesis score
Description
Calculates Angiogenesis score
Usage
get_angio_score(pdf)
Arguments
pdf |
A numeric data frame or matrix with samples as columns and gene/proteins as rows. |
Details
The angiogenesis score is defined as mean value of gene expressions in AG_gene_list. Scores are mean-centered and normalized by standard deviation based on distribution of scores in all samples.
Value
a dataframe of Angiogenesis scores for each sample
Examples
get_angio_score(pdf=sample_mRNA_data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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