get_TCI_score: Calculates a T cell inflammation score
In korkutlab/imogimap: What the Package Does (One Line, Title Case)
View source: R/get_TCI_score.R
get_TCI_score R Documentation
Calculates a T cell inflammation score
Description
Calculates a T cell inflammation score
Usage
get_TCI_score(pdf)
Arguments
pdf
A numeric data frame or matrix with samples as columns and gene/proteins as rows.
Details
The T cell inflammation score is defined as mean value of gene expressions in tcell_inflamed_gene_list. Scores are mean-centered and normalized by standard deviation based on distribution of scores in all samples in pdf.
Value
a dataframe of T cell inflammation scores for each sample
Examples
get_TCI_score(pdf=sample_mRNA_data)
korkutlab/imogimap documentation built on March 17, 2023, 8:22 a.m.
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View source: R/get_TCI_score.R
| get_TCI_score | R Documentation |
Calculates a T cell inflammation score
Description
Calculates a T cell inflammation score
Usage
get_TCI_score(pdf)
Arguments
pdf |
A numeric data frame or matrix with samples as columns and gene/proteins as rows. |
Details
The T cell inflammation score is defined as mean value of gene expressions in tcell_inflamed_gene_list. Scores are mean-centered and normalized by standard deviation based on distribution of scores in all samples in pdf.
Value
a dataframe of T cell inflammation scores for each sample
Examples
get_TCI_score(pdf=sample_mRNA_data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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