get_selected_features: Calculates and transforms default immune features within a...
In korkutlab/imogimap: What the Package Does (One Line, Title Case)
View source: R/get_select_features.R
get_selected_features R Documentation
Calculates and transforms default immune features within a specified sample cohort .
Description
Calculates and transforms default immune features within a specified sample cohort .
Usage
get_selected_features(pdf, feature)
Arguments
pdf
A numeric data frame or matrix with samples as columns and gene/proteins as rows.
feature
A list of character identifying one or more of the four expression based features: EMTscore, AGscore, TCIscore, or IFNGscore
Details
Given a cohort of samples, calculates immune features within the cohort and transforms their values using probability integral transform. The resulting feature values will have a standard uniform distribution between [0,1]
Value
A list with two dataframes containing transformed values for immune features and immune cell type fractions as listed in TCGA_immune_features_list.
Examples
get_selected_features(pdf=sample_mRNA_data,feature="EMTscore")
korkutlab/imogimap documentation built on March 17, 2023, 8:22 a.m.
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View source: R/get_select_features.R
| get_selected_features | R Documentation |
Calculates and transforms default immune features within a specified sample cohort .
Description
Calculates and transforms default immune features within a specified sample cohort .
Usage
get_selected_features(pdf, feature)
Arguments
pdf |
A numeric data frame or matrix with samples as columns and gene/proteins as rows. |
feature |
A list of character identifying one or more of the four expression based features: EMTscore, AGscore, TCIscore, or IFNGscore |
Details
Given a cohort of samples, calculates immune features within the cohort and transforms their values using probability integral transform. The resulting feature values will have a standard uniform distribution between [0,1]
Value
A list with two dataframes containing transformed values for immune features and immune cell type fractions as listed in TCGA_immune_features_list.
Examples
get_selected_features(pdf=sample_mRNA_data,feature="EMTscore")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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