Man pages for kpjonsson/kpjmisc
Miscellanous Functions
| as_points | Convert to point |
| clipboard | Use OS clipboard |
| coding_mutations | Coding mutations |
| colors | Custom color palettes |
| dnames | Custom color palettes |
| expected_vaf | Estimate somatic variant allele fraction (VAF) |
| facets_closeup | Generate gene-level Facets plot |
| fisher_test | Fisher's test |
| ggplot2_themes | 'ggplot2' themes |
| if_na | Replace 'NA's |
| impact_genes | IMPACT genes |
| kpjmisc | 'kpjmisc' package |
| oncokb_annotate_cna | Annotate OncoKB levels of evidence |
| plot_stratton | Stratton plot |
| plot_survival | Plot Kaplan-Meier plot |
| portal_link | cBioPortal link |
| read_germline | Read DMP distributed germline file |
| read_impact_repository_files | Helper functions to read files from MSK-IMPACT repository |
| read_maf | Read MAF file |
| read_signatures | Mutational signatures |
| rownum | Row numbers |
| setlist | Set operations |
| set_theme | Set 'ggplot2' theme |
| signature_barplot | Signature barplot |
| sort_oncoprint | Sort oncoprint |
| test_maf | Test MAF |
| truncating_mutations | Truncating mutations |
| write_out | Write function |
