facets_closeup: Generate gene-level Facets plot

In kpjonsson/kpjmisc: Miscellanous Functions

Generate gene-level Facets plot

Description

Generate gene-level Facets plot

Usage

facets_closeup(path, gene, chrom_range = NULL, plot = T,
  adjust_dlr = F, subset_snps = F)

Arguments

path	Path to Rdata oject
gene	One or multiple genes to plot
chrom_range	Range of chromosomes
plot	Plot or save as object
adjust_dlr	Set dipLogR to 0, essentially normalizing the log ratio
subset_snps	Subset the SNPs, for easier plotting. Boolean or numeric.

Value

If plot == T plots cnlr, valor and icnem objects else returns all as objects

Examples

facets_closeup('path_to_sample.Rdata', 'BRCA1', 17)

kpjonsson/kpjmisc documentation built on Jan. 14, 2024, 2:38 a.m.