read_impact_repository_files | R Documentation |
Helper functions that reads the most commonly used filed from the MSK-IMPACT Mercurial repository.
read_impact_maf(filename = NULL, unfiltered = F, germline = F)
read_impact_cna(filename = NULL)
read_impact_fusions(filename = NULL)
read_impact_samples(filename = NULL)
read_impact_patients(filename = NULL)
filename |
Override default filenames, assumes they exist in default location |
unfiltered |
Read MAF containing non-signed out mutation calls |
germline |
Retain germline calls in MAF |
Data object in tweaked cBioPortal format
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