Files in ksong4/NetPhorce
Phosphoproteomics Network Analysis (NetPhorce)
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NetPhorce.Rproj
R/classes.R
R/data.R
R/extractData.R
R/global.R
R/modifiedDEPFunction.R
R/network.R
R/plotting.R
R/preProcessing.R
R/processData.R
README.md
RPackageWorkflow.drawio
_pkgdown.yml
data/kinasesPhosphatases.rdata
data/oneConditionExample.RData
data/twoConditionsExample.RData
docs/404.html
docs/LICENSE.html
docs/articles/NetPhorce.html
docs/articles/NetPhorce_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/NetPhorce_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/NetPhorce_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/NetPhorce_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/NetPhorce_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/NetPhorce_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/NetPhorce_files/datatables-binding-0.24/datatables.js
docs/articles/NetPhorce_files/datatables-binding-0.26/datatables.js
docs/articles/NetPhorce_files/datatables-binding-0.27/datatables.js
docs/articles/NetPhorce_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/NetPhorce_files/dt-core-1.11.3/css/jquery.dataTables.extra.css
docs/articles/NetPhorce_files/dt-core-1.11.3/css/jquery.dataTables.min.css
docs/articles/NetPhorce_files/dt-core-1.11.3/js/jquery.dataTables.min.js
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docs/articles/NetPhorce_files/dt-core-1.12.1/css/jquery.dataTables.min.css
docs/articles/NetPhorce_files/dt-core-1.12.1/js/jquery.dataTables.min.js
docs/articles/NetPhorce_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/NetPhorce_files/htmlwidgets-1.6.1/htmlwidgets.js
docs/articles/index.html
docs/articles/rMD_V2_TwoConditionDemonstrationWithPlots.html
docs/articles/rMD_V2_TwoConditionDemonstrationWithPlots_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/rMD_V2_TwoConditionDemonstrationWithPlots_files/crosstalk-1.2.0/js/crosstalk.js
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docs/articles/rMD_V2_TwoConditionDemonstrationWithPlots_files/crosstalk-1.2.0/js/crosstalk.min.js
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docs/articles/rMD_V3_DataExtractionTutorial_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/rMD_V3_DataExtractionTutorial_files/datatables-binding-0.24/datatables.js
docs/articles/rMD_V3_DataExtractionTutorial_files/datatables-binding-0.27/datatables.js
docs/articles/rMD_V3_DataExtractionTutorial_files/datatables-css-0.0.0/datatables-crosstalk.css
docs/articles/rMD_V3_DataExtractionTutorial_files/dt-core-1.11.3/css/jquery.dataTables.extra.css
docs/articles/rMD_V3_DataExtractionTutorial_files/dt-core-1.11.3/css/jquery.dataTables.min.css
docs/articles/rMD_V3_DataExtractionTutorial_files/dt-core-1.11.3/js/jquery.dataTables.min.js
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docs/articles/rMD_V3_DataExtractionTutorial_files/dt-core-1.12.1/js/jquery.dataTables.min.js
docs/articles/rMD_V3_DataExtractionTutorial_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/rMD_V3_DataExtractionTutorial_files/htmlwidgets-1.6.1/htmlwidgets.js
docs/articles/rMD_V4_UseOwnData.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/checkPreloadKinaseTable.html
docs/reference/confirmColumnNames.html
docs/reference/confirmIntensityColumns.html
docs/reference/convertShinyToR.html
docs/reference/extractNetworkResults.html
docs/reference/extractSummaryTable.html
docs/reference/figures/NetPhorce.PNG
docs/reference/figures/NetPhorceProcess.png
docs/reference/findClusters.html
docs/reference/findPeptideIDs.html
docs/reference/findUniqueIDs.html
docs/reference/index.html
docs/reference/kinasesPhosphatases.html
docs/reference/netPhorce-class.html
docs/reference/networkAnalysis.html
docs/reference/oneConditionExample.html
docs/reference/plotClustersHeatmap.html
docs/reference/plotDistribution.html
docs/reference/plotHistBox.html
docs/reference/plotMultiPeptides.html
docs/reference/plotNetPhorce.html
docs/reference/plotPCA.html
docs/reference/plotRegulation.html
docs/reference/plotSinglePeptide.html
docs/reference/plotUniqueIDsHeatmaps.html
docs/reference/plot_normalization.html
docs/reference/processData.html
docs/reference/regulationCheck.html
docs/reference/show-methods.html
docs/reference/twoConditionsExample.html
docs/reference/validateKinaseTable.html
docs/sitemap.xml
images/NetPhorce.PNG
images/NetPhorceProcess.png
man/checkPreloadKinaseTable.Rd
man/confirmColumnNames.Rd
man/confirmIntensityColumns.Rd
man/convertShinyToR.Rd
man/extractNetworkResults.Rd
man/extractSummaryTable.Rd
man/figures/NetPhorce.PNG
man/figures/NetPhorceProcess.png
man/findClusters.Rd
man/findPeptideIDs.Rd
man/findUniqueIDs.Rd
man/kinasesPhosphatases.Rd
man/netPhorce-class.Rd
man/networkAnalysis.Rd
man/oneConditionExample.Rd
man/plotClustersHeatmap.Rd
man/plotDistribution.Rd
man/plotHistBox.Rd
man/plotMultiPeptides.Rd
man/plotNetPhorce.Rd
man/plotPCA.Rd
man/plotRegulation.Rd
man/plotSinglePeptide.Rd
man/plotUniqueIDsHeatmaps.Rd
man/plot_normalization.Rd
man/processData.Rd
man/regulationCheck.Rd
man/show-methods.Rd
man/twoConditionsExample.Rd
man/validateKinaseTable.Rd
vignettes/NetPhorce.R
vignettes/NetPhorce.Rmd
vignettes/rMD_V2_TwoConditionDemonstrationWithPlots.R
vignettes/rMD_V2_TwoConditionDemonstrationWithPlots.rmd
vignettes/rMD_V3_DataExtractionTutorial.R
vignettes/rMD_V3_DataExtractionTutorial.rmd
vignettes/rMD_V4_UseOwnData.rmd
