OmicSelector_best_signature_proposals_meta11: OmicSelector_best_signature_proposals_meta11
In kstawiski/OmicSelector: OmicSelector - a package for biomarker selection based on high-throughput experiments.
View source: R/OmicSelector_best_signature_proposals_meta11.R
OmicSelector_best_signature_proposals_meta11 R Documentation
OmicSelector_best_signature_proposals_meta11
Description
Propose the best signture based on benchamrk methods.
This function calculated the 'metaIndex11' value which is the Youden-like score on validation set (the only one that was never used in any section of the pipeline).
Formula: 'metaIndex11 = validation sensitivitiy + validation specificity - 1'
In the next step, it sorts the miRNA sets based on 'metaIndex11' score. The first row in resulting data frame is the winner miRNA set.
Usage
OmicSelector_best_signature_proposals_meta11(
benchmark_csv = "benchmark1578929876.21765.csv"
)
Arguments
benchmark_csv
Path to benchmark csv.
Value
The benchmark sorted by metaIndex. First row is the best performing miRNA set.
kstawiski/OmicSelector documentation built on April 10, 2024, 11:11 p.m.
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View source: R/OmicSelector_best_signature_proposals_meta11.R
| OmicSelector_best_signature_proposals_meta11 | R Documentation |
OmicSelector_best_signature_proposals_meta11
Description
Propose the best signture based on benchamrk methods. This function calculated the 'metaIndex11' value which is the Youden-like score on validation set (the only one that was never used in any section of the pipeline). Formula: 'metaIndex11 = validation sensitivitiy + validation specificity - 1' In the next step, it sorts the miRNA sets based on 'metaIndex11' score. The first row in resulting data frame is the winner miRNA set.
Usage
OmicSelector_best_signature_proposals_meta11(
benchmark_csv = "benchmark1578929876.21765.csv"
)
Arguments
benchmark_csv |
Path to benchmark csv. |
Value
The benchmark sorted by metaIndex. First row is the best performing miRNA set.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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