OmicSelector_combat: OmicSelector_combat

In kstawiski/OmicSelector: OmicSelector - a package for biomarker selection based on high-throughput experiments.

OmicSelector_combat

Description

Use combat to fight batch effect.

Usage

OmicSelector_combat(
  danex,
  metadane = metadane,
  model = c("~ Batch", "~ Batch + Class")
)

Arguments

danex	Matrix with miRNA normalized expression values (e.g. TPM, deltaCt) with miRNAs in columns and cases in rows.
metadane	Metadata with 'Class' and 'Batch' variable.
model	Model of correction (application of covariates).

Value

Batch-corrected dataset.

kstawiski/OmicSelector documentation built on April 10, 2024, 11:11 p.m.