kstawiski/miRNAselector
miRNAselector - a package for biomarker selection based on high-throughput experiments.

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kstawiski/miRNAselector: miRNAselector - a package for biomarker selection based on high-throughput experiments.
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miRNAselector - a package for biomarker selection based on high-throughput experiments.

.Rbuildignore
.github/.gitignore
.github/workflows/docker.yml
.github/workflows/r.yml
.gitignore
.vs/ProjectSettings.json
.vs/PythonSettings.json
.vs/VSWorkspaceState.json
.vs/miRNAselector/v16/.suo
.vs/slnx.sqlite
.vscode/launch.json
DESCRIPTION
Dockerfile
Dockerfile.ci
Dockerfile.gpu
Dockerfile.public
LICENSE
NAMESPACE
NAMESPACE_old
R/ks.PCA.R R/ks.PCA_3D.R R/ks.benchmark.R R/ks.best_signiture_de.R R/ks.best_signiture_proposals.R R/ks.best_signiture_proposals_meta11.R R/ks.combat.R R/ks.correct_miRNA_names.R R/ks.correlation_plot.R R/ks.counts_to_log10tpm.R R/ks.create_miRNA_formula.R R/ks.diverge_color.R R/ks.docker.update_progress.R R/ks.download_tissue_miRNA_data_from_TCGA.R R/ks.get_benchmark.R R/ks.get_benchmark_methods.R R/ks.get_miRNAs_from_benchmark.R R/ks.heatmap.3.R R/ks.heatmap.R R/ks.load_datamix.R R/ks.load_extension.R R/ks.log.R R/ks.merge_formulas.R R/ks.miRNA_differential_expression.R R/ks.miRNA_signiture_overlap.R R/ks.miRNAselector.R R/ks.myclust.R R/ks.mydist.R R/ks.prepare_split.R R/ks.process_tissue_miRNA_TCGA.R R/ks.profileplot.R R/ks.propensity_score_matching.R R/ks.setup.R R/ks.table.R R/ks.vulcano_plot.R R/mk.iteratedRFE.R R/zzz.R README.md
_config.yml
_pkgdown.yml
build.R
data/miRNAselector_tutorial_balanced_benchmark.rda
data/miRNAselector_tutorial_balanced_dataset.rda
data/miRNAselector_tutorial_balanced_mixed.rda
data/orginal_TCGA_data.rda
docker/1_formalcheckcsv.R
docker/1_preprocessing.sh
docker/benchmark.R docker/best_signiture.Rmd
docker/build_package.sh
docker/codespaces.sh
docker/default
docker/dev_docker-gpu.sh
docker/dev_php_update.sh
docker/docker_push.sh
docker/entrypoint.sh
docker/feature_selection.R
docker/jupyter_notebook_config.py
docker/jupyter_notebook_config_public.py
docker/keras.R
docker/logo.png
docker/nginx.conf
docker/own_analysis.R
docker/php.ini
docker/recover_fs.R docker/register_jupyter.R
docker/rstudio.conf
docker/software_update.sh
docker/update.R
docker/www.conf
example/Elias2017.csv
extensions/deeplearning.R
hyperparameters_deeplearning_results.csv
index.md
inst/extdata/wx/DearWXpub/GENE_LIST_TCGA_ASSEM.txt
inst/extdata/wx/DearWXpub/LICENSE
inst/extdata/wx/DearWXpub/Module_A.R inst/extdata/wx/DearWXpub/README.md
inst/extdata/wx/DearWXpub/input_data_1.csv
inst/extdata/wx/DearWXpub/input_data_2.csv
inst/extdata/wx/DearWXpub/slp_wx_weights_best.hdf5
inst/extdata/wx/DearWXpub/src/03_featureselection_wx.log
inst/extdata/wx/DearWXpub/src/__pycache__/wx_core.cpython-36.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_core.cpython-37.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_hyperparam.cpython-36.pyc
inst/extdata/wx/DearWXpub/src/__pycache__/wx_hyperparam.cpython-37.pyc
inst/extdata/wx/DearWXpub/src/annotation.csv
inst/extdata/wx/DearWXpub/src/data.csv
inst/extdata/wx/DearWXpub/src/input_data_1.csv
inst/extdata/wx/DearWXpub/src/input_data_2.csv
inst/extdata/wx/DearWXpub/src/test-anno.csv
inst/extdata/wx/DearWXpub/src/test-data.csv
inst/extdata/wx/DearWXpub/src/train-anno.csv
inst/extdata/wx/DearWXpub/src/train-data.csv
inst/extdata/wx/DearWXpub/src/wx_core.py
inst/extdata/wx/DearWXpub/src/wx_core.pyc
inst/extdata/wx/DearWXpub/src/wx_example.py
inst/extdata/wx/DearWXpub/src/wx_gse_multi_class.py
inst/extdata/wx/DearWXpub/src/wx_hyperparam.py
inst/extdata/wx/DearWXpub/src/wx_hyperparam.pyc
inst/extdata/wx/DearWXpub/src/wx_konsta.py
inst/extdata/wx/DearWXpub/src/wx_konsta_z.py
inst/extdata/wx/DearWXpub/src/wx_tcga.py
inst/extdata/wx/DearWXpub/src/wyniki.npy
inst/extdata/wx/DearWXpub/src/wyniki.txt
inst/extdata/wx/DearWXpub/tcga_download.R
inst/extdata/wx/annotation.csv
inst/extdata/wx/data.csv
install_snippet.R man/ks.PCA.Rd man/ks.PCA_3D.Rd man/ks.benchmark.Rd man/ks.best_signiture_de.Rd man/ks.best_signiture_proposals.Rd man/ks.best_signiture_proposals_meta11.Rd man/ks.combat.Rd man/ks.correct_miRNA_names.Rd man/ks.correlation_plot.Rd man/ks.counts_to_log10tpm.Rd man/ks.create_miRNA_formula.Rd man/ks.diverge_color.Rd man/ks.docker.update_progress.Rd man/ks.download_tissue_miRNA_data_from_TCGA.Rd man/ks.get_benchmark.Rd man/ks.get_benchmark_methods.Rd man/ks.get_miRNAs_from_benchmark.Rd man/ks.heatmap.3.Rd man/ks.heatmap.Rd man/ks.load_datamix.Rd man/ks.load_extension.Rd man/ks.log.Rd man/ks.merge_formulas.Rd man/ks.miRNA_differential_expression.Rd man/ks.miRNA_signiture_overlap.Rd man/ks.miRNAselector.Rd man/ks.myclust.Rd man/ks.mydist.Rd man/ks.prepare_split.Rd man/ks.process_tissue_miRNA_TCGA.Rd man/ks.profileplot.Rd man/ks.propensity_score_matching.Rd man/ks.setup.Rd man/ks.table.Rd man/ks.vulcano_plot.Rd man/mk.iteratedRFE.Rd
miRNAselector.Rproj
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templetes/1_preprocessing.rmd templetes/DE.rmd templetes/result_raport.rmd vignettes/DeepLearning_shotgun.R vignettes/Tutorial.R vignettes/Tutorial.Rmd
vignettes/Tutorial.html
vignettes/Tutorial_benchmark.R vignettes/Tutorial_miRNAselector.R
vignettes/balanced_dataset.csv.gz
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vignettes/methods.html
vignettes/metody.R vignettes/metody.Rmd
vignettes/metody.html
vignettes/models.html
vignettes/setup.R
vignettes/styl.css
vignettes/tissue_miRNA_counts.csv.gz
kstawiski/miRNAselector documentation built on Oct. 10, 2020, 9:03 a.m.

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