addGeneSet: Add a new gene set
In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

addGeneSet

R Documentation

Add a new gene set

Description

Stores a new gene set in the spata-object.

Usage

addGeneSet(object, class_name, gs_name, genes, overwrite = FALSE)

addGeneSetsInteractive(object)

Arguments

`object`	A valid spata-object.
`class_name`	Character value. The class the gene set belongs to..
`gs_name`	Character value. The name of the new gene set.
`genes`	The genes of interest specified as a character vector.
`overwrite`	Logical. Overwrites existing gene sets with the same `class_name` - `gs_name` combination.

Details

Combines class_name and gs_name to the final gene set name. Gene set classes and gene set names are separated by '_' and handled like this in all additional gene set related functions which is why class_name must not contain any '_'.