filterTrends: Filter variables of a certain trend

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Filter variables of a certain trend

Description

Extracts the genes or gene sets that follow a desired trend.

Usage

filterTrends(atdf, limit = 5, trends = "all", variables_only = TRUE)

Arguments

atdf	An assessed trajectory data.frame (easily accessed via assessTrajectoryTrends()).
limit	Numeric value. The maximum area-under-the-curve value the trajectory-trend-assessment might have.
variables_only	Logical. If set to TRUE a character of variable-names is returned. If set to FALSE the filtered data.frame is returned.
trend	Character vector. The patterns of interest.

Value

A character vector of gene or gene-set names that follow the specified patterns to the specified degree.

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.