addUmapData: Add dimensional reductions

In kueckelj/SPATA: A Toolbox for Spatial Gene Expression Analysis

Add dimensional reductions

Description

Adds or replaces dimensional reduction data. If the object contains several sample the sample-variable of the input data.frame denotes the sample belonging.

Usage

addUmapData(object, umap_df, overwrite = FALSE)

addTsneData(object, tsne_df, overwrite = FALSE)

Arguments

object	A valid spata-object.
umap_df	A data.frame containing the character variables barcodes, sample and the numeric variables umap1, umap2.
overwrite	Logical. Must be set to TRUE in order to overwrite already existing data.
tsne_df	A data.frame containing the character variables barcodes, sample and the numeric variables tsne1, tsne2.

Value

An updated spata-object.

kueckelj/SPATA documentation built on March 22, 2022, 9:59 p.m.