SpatialSegmentation-class: The 'SpatialSegmentation' - Class
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis
SpatialSegmentation-class R Documentation
The SpatialSegmentation - Class
Description
Abstracts the concept of manual segmentation/annotation
of the sample surface.
Slots
idcharacter. String to identify the object in a list of multiple objects of
the same class.
infolist. Stores meta data and miscellaneous information regarding the
spatial segmentation. Slots that should always exist:
sample: Character string. The name of the sample (slot @sample of the SPATA2 object.)
segmentslist. A named, nested list. Named according to the labels
given to each segment. E.g. list of length two with slot necrosis and vivid.
Each named slot is a unnamed list. In this list each slot is a list of data.frames with
a x and a y variable. First data.frame, named exterior corresponds to the exterior border of
the segment. Every following data.frame is named interior-suffix where the suffix is a number
and corresponds to interior holes of the segment.
kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.
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| SpatialSegmentation-class | R Documentation |
The SpatialSegmentation - Class
Description
Abstracts the concept of manual segmentation/annotation of the sample surface.
Slots
idcharacter. String to identify the object in a list of multiple objects of the same class.
infolist. Stores meta data and miscellaneous information regarding the spatial segmentation. Slots that should always exist:
sample: Character string. The name of the sample (slot @sample of the
SPATA2object.)
segmentslist. A named, nested list. Named according to the labels given to each segment. E.g. list of length two with slot necrosis and vivid. Each named slot is a unnamed list. In this list each slot is a list of data.frames with a x and a y variable. First data.frame, named exterior corresponds to the exterior border of the segment. Every following data.frame is named interior-suffix where the suffix is a number and corresponds to interior holes of the segment.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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