computeGeneMetaData | R Documentation |
Calculates summary statistics of all genes (rows) of the provided expression matrix. The result is stored in a named list of three slots.
data: A data.frame in which each observation refers to a gene and the variables provide the respective information about the gene's expression properties
mtr_name: A character value that denotes the name of the matrix used.
describe_args: A list of additional arguments passed to psych::describe()
via
... .
computeGeneMetaData(object, mtr_name = NULL, verbose = TRUE, ...)
computeGeneMetaData2(expr_mtr, verbose = TRUE, ...)
object |
An object of class |
mtr_name |
A character value that denotes the name of the exprssion matrix with which one can refer to it in subsequent functions. |
verbose |
Logical. If set to TRUE informative messages regarding the computational progress will be printed. (Warning messages will always be printed.) |
... |
Additional arguments given to |
expr_mtr |
A matrix in which the rownames correspond to the gene names and the column names correspond to the barcode-spots. |
Depends on the function used:
computeGeneMetaData()
: An updated spata-object.
computeGeneMetaData2()
: The list referred to in the function's description without the slot mtr_name.
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