gradientToModelIAS | R Documentation |
model_add
Generates appropriate input for argument model_add
of functions related to Spatial Trajectory Screening (STS) or
Image Annotation Screening (IAS). To screen for gradient cooexpression.
gradientToModelIAS(
object,
id,
variables,
distance = NA_integer_,
binwidth = getCCD(object),
n_bins_circle = NA_integer_,
include_area = FALSE,
verbose = TRUE
)
gradientToModelSTS(
object,
id,
variables,
binwidth = getCCD(object, "px"),
n_bins = NA_integer_,
verbose = TRUE
)
object |
An object of class |
id |
Character value. ID of the spatial trajectory or the image annotation of interest. |
variables |
Character vector. All numeric variables (meaning genes, gene-sets and numeric features) that are supposed to be included in the screening process. |
distance , binwidth , n_bins_circle , n_bins |
The input given to the desired screening- or visualization functions. |
verbose |
Logical. If set to TRUE informative messages regarding the computational progress will be printed. (Warning messages will always be printed.) |
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