hlpr_process_spatial_correlation_cluster: Process spatial correlation results
In kueckelj/SPATA2: A Toolbox for Spatial Gene Expression Analysis
hlpr_process_spatial_correlation_cluster R Documentation
Process spatial correlation results
Description
Helper function to be used in clusterSpatialCorrelationResults().
Takes a cutree data.frame and a distance data.frame and returns a named list:
assessment_df: A data.frame that attempts to evaluate all cluster's
quality by providing the average distance between it's genes.
distances_list: A named list of data.frames. Each data.frame contains the
gene-gene distances between all genes the cluster it corresponds to contains.
gene_names_list: A named list of character vectors. Each vector contains the
unique gene names of the cluster it corresponds to.
k: k-value
h: h-value
Usage
hlpr_process_spatial_correlation_cluster(cutree_df, dist_df, input)
Arguments
cutree_df
Data.frame of two variables: gene and cluster-belonging.
dist_df
Data.frame of three variables: gene1, gene2, distance
kueckelj/SPATA2 documentation built on March 16, 2024, 10:25 a.m.
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| hlpr_process_spatial_correlation_cluster | R Documentation |
Process spatial correlation results
Description
Helper function to be used in clusterSpatialCorrelationResults().
Takes a cutree data.frame and a distance data.frame and returns a named list:
assessment_df: A data.frame that attempts to evaluate all cluster's quality by providing the average distance between it's genes.
distances_list: A named list of data.frames. Each data.frame contains the gene-gene distances between all genes the cluster it corresponds to contains.
gene_names_list: A named list of character vectors. Each vector contains the unique gene names of the cluster it corresponds to.
k: k-value
h: h-value
Usage
hlpr_process_spatial_correlation_cluster(cutree_df, dist_df, input)
Arguments
cutree_df |
Data.frame of two variables: gene and cluster-belonging. |
dist_df |
Data.frame of three variables: gene1, gene2, distance |
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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