plotPseudotime | R Documentation |
A wrapper around monocle3::plot_cells()
.
plotPseudotime(
object,
use_cds_file = FALSE,
save_cds_file = FALSE,
preprocess_method = "PCA",
cluster_method = "leiden",
color_to = NULL,
...,
verbose = TRUE
)
object |
A valid spata-object. |
use_cds_file |
A directory leading to a .rds file containing a valid cell_data_set-object previously calculated for the specified object. Specified as a character value. If set to FALSE the cell_data_set object will be created from scratch. |
save_cds_file |
A filename/directory (that does not already exists) under which the used or created cell_data_set-object is going to be stored specified as a character value. Should end with .rds. |
preprocess_method |
Given to |
cluster_method |
Given to |
... |
Additional arguments given to |
Returns a list of one or two ggplot-objects that can be additionally customized according to the rules of the ggplot2-framework.
pseudotime: Monocle3-Umap colored by feature 'pseudotime'.
color_to
: Monocle3-Umap colored by input of color_to
. (if specified)
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