getClusterNames: Obtain valid cluster names

In kueckelj/celltracer: An Analysis-Toolbox for High-Throughput Cell Imaging Data

Description

Returns all valid cluster names that can be used as input for the across-argument.

Usage

getClusterNames(object, phase = "first_tmt", algorithm_subset = NULL)

Arguments

object	A valid cell tracer object.
phase	Character value. Refers to the phase of the experiment. Valid inputs are: 'before_tmt' Uses the data that refers to the time before the treatment. 'first_tmt' Uses the data that refers tot the time after the treatment. Note: This argument is ignored if the experiment set up did not include any treatment or the treatment started right from the beginning.
algorithm_subset	Character value or NULL. If character only the cluster names of the algorithms denoted are returned.

Value

A list named according to all cluster algorithms found. Each named slot contains a character vector of all cluster names of the algorithm.

kueckelj/celltracer documentation built on June 2, 2021, 6:37 a.m.