README.md

In kwanjeeraw/metabox: metabox

metabox

a toolbox for metabolomic data analysis, interpretation and integrative exploration

Version: 1.2 (01 December 2016)

Description

An R-based web applications for data processing, statistical analysis, integrative visual exploration and functional analysis with several approaches (such as functional class scoring, overrepresentation analysis and WordCloud generation).

Installation and Running metabox

1. Require R software
2. Require opencpu
3. Install metabox using the following commands

#Install devtools R package, if not exist
install.packages('devtools', repos="http://cran.rstudio.com/")
library(devtools)

#Install dependent packages
source('https://bioconductor.org/biocLite.R')
biocLite(c('impute','preprocessCore','GO.db','AnnotationDbi','WGCNA','piano','qpgraph','BioNet','ChemmineR'))

#Install metabox
install_github('kwanjeeraw/metabox')
install.packages("openssl")
#Install OpenCPU single-user server
install.packages("opencpu")
library(opencpu)

## Run metabox on a web browser
opencpu$browse("library/metabox/www")
ocpu_start_app("metabox")

Documentation

see homepage

License

GNU General Public License (v3)

kwanjeeraw/metabox documentation built on May 20, 2019, 7:07 p.m.