blastHomology: Identifies breakpoint sequences with signficant homology to...
In lachlanmcintosh/SAP: A SNP analysis pipeline
Description
Identifies breakpoint sequences with signficant homology to BLAST database
sequences. Apparent breakpoints containing such sequence are better explained
by the sequence from the BLAST database such as by alternate assemblies.
Usage
1
blastHomology(gr, ref, db, anchorLength = 150)
Details
See https://github.com/mhahsler/rBLAST for rBLAST package installation
instructions
Download and install the package from AppVeyor or install via install_github("mhahsler/rBLAST") (requires the R package devtools)
lachlanmcintosh/SAP documentation built on May 20, 2019, 7:32 p.m.
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Description
Identifies breakpoint sequences with signficant homology to BLAST database sequences. Apparent breakpoints containing such sequence are better explained by the sequence from the BLAST database such as by alternate assemblies.
Usage
1 | blastHomology(gr, ref, db, anchorLength = 150)
|
Details
See https://github.com/mhahsler/rBLAST for rBLAST package installation instructions Download and install the package from AppVeyor or install via install_github("mhahsler/rBLAST") (requires the R package devtools)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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