blastHomology: Identifies breakpoint sequences with signficant homology to...

Description Usage Details

View source: R/BreakpointGRanges.R

Description

Identifies breakpoint sequences with signficant homology to BLAST database sequences. Apparent breakpoints containing such sequence are better explained by the sequence from the BLAST database such as by alternate assemblies.

Usage

1
blastHomology(gr, ref, db, anchorLength = 150)

Details

See https://github.com/mhahsler/rBLAST for rBLAST package installation instructions Download and install the package from AppVeyor or install via install_github("mhahsler/rBLAST") (requires the R package devtools)


lachlanmcintosh/SAP documentation built on May 21, 2017, 8:27 a.m.