Description Usage Arguments Details
Returns the reference sequence around the breakpoint position
1 | referenceSequence(gr, ref, anchoredBases, followingBases = anchoredBases)
|
gr |
breakpoint GRanges |
ref |
Reference BSgenome |
anchoredBases |
Number of bases leading into breakpoint to extract |
followingBases |
Number of reference bases past breakpoint to extract |
The sequence is the sequenced traversed from the reference anchor bases to the breakpoint. For backward (-) breakpoints, this corresponds to the reverse compliment of the reference sequence bases.
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