breakpointRanges: Extracts the structural variants as a BreakendGRanges
In lachlanmcintosh/SAP: A SNP analysis pipeline
Description
Extracts the structural variants as a BreakendGRanges
Usage
1
breakpointRanges(x, ...)
Details
Structural variants are converted to breakend notation.
Due to ambiguities in the VCF specifications, structural variants
with multiple alt alleles are not supported.
If HOMLEN or HOMSEQ is defined without CIPOS, it is assumed that
the variant position is left aligned.
lachlanmcintosh/SAP documentation built on May 20, 2019, 7:32 p.m.
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Description
Extracts the structural variants as a BreakendGRanges
Usage
1 | breakpointRanges(x, ...)
|
Details
Structural variants are converted to breakend notation.
Due to ambiguities in the VCF specifications, structural variants with multiple alt alleles are not supported.
If HOMLEN or HOMSEQ is defined without CIPOS, it is assumed that the variant position is left aligned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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