| autoCompareClustering | Compare Clusterings Automatically |
| betweenmetrics | Between-Method Metrics |
| chocellcycle | Cho Yeast Cell Cycle Dataset |
| choclusters | Original Cho Cell Cycle Cluster Assignments |
| choresults | Consense Result Set for Cho Cell Cycle |
| clusterCenters | Cluster Center function |
| clusterList | Cluster List |
| clusterOutput | Clustering Output functions |
| ClusterReport | Cluster Report |
| CompareClustering | Compare Clusterings |
| countcluster | produce a vector of cluster counts of each cluster |
| getClusterInfo | Get Clustering Info |
| homogeneity | Calculates the homogeneity of a clustering. |
| IndexGene | Index Gene |
| inspectTree | Inspect Dendrograms |
| jaccard | Jaccard Index |
| methodlistAuto | methodlistAuto |
| separation | Average Separation of a clustering. |
| variationInformation | Variation of Information |
| withinmetrics | Within-Method Metrics |
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