choclusters: Original Cho Cell Cycle Cluster Assignments

In laderast/Consense: Consense: a package for evaluating multiple clusterings

Description

This is the set of the original cluster assignments assigned by Cho in his paper. This dataset consisted of 384 genes separated by Cho into 5 clusters by phase. Genes whose transcripts peaked in a particular phase of the cell cycle were classified in a cluster belonging to that phase. For example, a gene whose transcript peaked in the early G1 phase was classified as belonging to the Early G1 cluster. Genes whose transcripts peaked in multiple phases were removed by Yeung for this subset. Because this dataset was separated visually by peak, we do not expect clustering methods to completely reproduce the original clusterings.

Here is a legend to the assignments: 1 - early G1 phase 2 - late G1 phase 3 - S phase 4 - G2 phase 5 - M phase

Usage

data(choclusters)

Format

A one column matrix of factors with cluster assignments for each gene.

Source

http://faculty.washington.edu/kayee/cluster/

References

Cho, R.J., et al., A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell, 1998. 2:65-73

Yeung, K.Y., D.R. Haynor, and W.L. Ruzzo, Validating clustering for gene expression data. Bioinformatics, 2001. 17:309-18.

laderast/Consense documentation built on May 20, 2019, 7:32 p.m.