CellCycleScoring: Score cell cycle phases
In lambdamoses/SeuratBasics: Slimmed down version of Seurat

Description Usage Arguments Value See Also Examples

Score cell cycle phases

1	CellCycleScoring(object, s.features, g2m.features, set.ident = FALSE, ...)

`object`	A Seurat object
`s.features`	A vector of features associated with S phase
`g2m.features`	A vector of features associated with G2M phase
`set.ident`	If true, sets identity to phase assignments
`...`	Arguments to be passed to `AddModuleScore` Stashes old identities in 'old.ident'

A Seurat object with the following columns added to object meta data: S.Score, G2M.Score, and Phase

AddModuleScore

## Not run: 
# pbmc_small doesn't have any cell-cycle genes
# To run CellCycleScoring, please use a dataset with cell-cycle genes
# An example is available at http://satijalab.org/seurat/cell_cycle_vignette.html
pbmc_small <- CellCycleScoring(
  object = pbmc_small,
  g2m.features = cc.genes$g2m.genes,
  s.features = cc.genes$s.genes
)
head(x = pbmc_small@meta.data)

## End(Not run)