Chromatin Segmentation in R

Global functions | |
---|---|

CLI | Source code |

argName | Source code |

automaticColoring | Source code |

avgCountsPerClust | Source code |

avgStateProfile | Source code |

bindCList | Source code |

bindCols | Source code |

checkBinsize | Source code |

checkOption | Source code |

checkWritable | Source code |

clist2mlist | Source code |

col2bedCol | Source code Source code |

colSummary | Source code |

convertArg | Source code |

defaultRepFun | Source code |

defaultSFFun | Source code |

domyheat | Source code |

epicseg | Man page |

epicseg-package | Man page |

expRank | Source code |

expRankMatrix | Source code |

file_ext | Source code |

fixLength | Source code |

getBEDFormat | Source code |

getBin | Source code |

getCLIsubprograms | Source code |

getGetcountsOptions | Source code |

getLauncher | Source code |

getLegendSize | Source code |

getMAI | Source code |

getMeanMatrix | Source code |

getNBs | Source code |

getNormalizeCountsOptions | Source code |

getPS | Source code |

getProg | Source code |

getRef | Source code |

getReportOptions | Source code |

getSegmentOptions | Source code |

getcounts | Man page Source code |

getcountsCLI | Source code |

htmlFooter | Source code |

htmlHeader | Source code |

htmlImgLink | Source code |

htmlLink | Source code |

htmlMatToTable | Source code |

htmlSection | Source code |

htmlTableRow | Source code |

ifHasField | Source code |

int2str | Source code |

isProbVector | Source code |

isRdata | Source code |

kfoots_error_handler | Source code |

label_sc_path | Source code |

linearNormalization | Source code |

makeBamtab | Source code |

makeOptions | Source code |

makePath | Source code |

matchModelToCounts | Source code |

matchOptsWithArgs | Source code |

mlist2clist | Source code |

myheat | Source code |

myimage | Source code |

mypretty | Source code |

normalizecounts | Man page Source code |

normalizecountsCLI | Source code |

openDevice | Source code |

parseArgs | Source code |

parseNstates | Source code |

parseRows | Source code |

pickColors | Source code |

pickLabels | Source code |

plotNBs | Source code |

plotProfile | Source code |

plotProfileAndLegend2Dev | Source code |

printUsage | Source code |

print_CLI | Source code |

propagateErrors | Source code |

qual.pal | Source code |

quantileNorm | Source code |

quantileNormalization | Source code |

readAnnotations | Source code |

readColors | Source code |

readCounts | Source code |

readModel | Source code |

readRdata | Source code |

readRegions | Source code |

refineRegions | Man page Source code |

rename | Source code |

reoderMarks | Source code |

reorderFitStates | Source code |

report | Man page Source code |

reportAnnot | Source code |

reportAnnots | Source code |

reportCLI | Source code |

reportLMeans | Source code |

reportMeans | Source code |

reportModel | Source code |

reportNBs | Source code |

reportRdata | Source code |

reportSegmList | Source code |

reportTrans | Source code |

rowsToStr | Source code |

safe_mclapply | Source code |

sanitizeFilename | Source code |

searchOptArg | Source code |

segment | Man page Source code |

segmentCLI | Source code |

segmentsToBed | Source code |

seq.pal | Source code |

setDim_unsafe | Source code |

setDimnames_unsafe | Source code |

simulateCLI | Source code |

smallWeightHamiltonianPath | Source code |

squareCoords | Source code |

statesToSegments | Source code |

statesToSegments_helper | Source code |

stretchLens | Source code |

tabf | Source code |

tabf2 | Source code |

testMeanAndMedian | Source code |

testSortCounts | Source code |

toRGBVector | Source code |

toString_safe | Source code |

usr2in | Source code |

validateAutoColors | Source code |

validateBamtab | Source code |

validateCList | Source code |

validateColors | Source code |

validateCounts | Source code |

validateModel | Source code |

validateOutdir | Source code |

validatePath | Source code |

validateVmat | Source code |

writeColors | Source code |

writeCounts | Source code |

writeCountsTXT | Source code |

writeModel | Source code |

writeRegions | Source code |

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