API for lamortenera/epicseg
Chromatin Segmentation in R

Global functions
CLI Source code
argName Source code
automaticColoring Source code
avgCountsPerClust Source code
avgStateProfile Source code
bindCList Source code
bindCols Source code
checkBinsize Source code
checkOption Source code
checkWritable Source code
clist2mlist Source code
col2bedCol Source code Source code
colSummary Source code
convertArg Source code
defaultRepFun Source code
defaultSFFun Source code
domyheat Source code
epicseg Man page
epicseg-package Man page
expRank Source code
expRankMatrix Source code
file_ext Source code
fixLength Source code
getBEDFormat Source code
getBin Source code
getCLIsubprograms Source code
getGetcountsOptions Source code
getLauncher Source code
getLegendSize Source code
getMAI Source code
getMeanMatrix Source code
getNBs Source code
getNormalizeCountsOptions Source code
getPS Source code
getProg Source code
getRef Source code
getReportOptions Source code
getSegmentOptions Source code
getcounts Man page Source code
getcountsCLI Source code
htmlFooter Source code
htmlHeader Source code
htmlImgLink Source code
htmlLink Source code
htmlMatToTable Source code
htmlSection Source code
htmlTableRow Source code
ifHasField Source code
int2str Source code
isProbVector Source code
isRdata Source code
kfoots_error_handler Source code
label_sc_path Source code
linearNormalization Source code
makeBamtab Source code
makeOptions Source code
makePath Source code
matchModelToCounts Source code
matchOptsWithArgs Source code
mlist2clist Source code
myheat Source code
myimage Source code
mypretty Source code
normalizecounts Man page Source code
normalizecountsCLI Source code
openDevice Source code
parseArgs Source code
parseNstates Source code
parseRows Source code
pickColors Source code
pickLabels Source code
plotNBs Source code
plotProfile Source code
plotProfileAndLegend2Dev Source code
printUsage Source code
print_CLI Source code
propagateErrors Source code
qual.pal Source code
quantileNorm Source code
quantileNormalization Source code
readAnnotations Source code
readColors Source code
readCounts Source code
readModel Source code
readRdata Source code
readRegions Source code
refineRegions Man page Source code
rename Source code
reoderMarks Source code
reorderFitStates Source code
report Man page Source code
reportAnnot Source code
reportAnnots Source code
reportCLI Source code
reportLMeans Source code
reportMeans Source code
reportModel Source code
reportNBs Source code
reportRdata Source code
reportSegmList Source code
reportTrans Source code
rowsToStr Source code
safe_mclapply Source code
sanitizeFilename Source code
searchOptArg Source code
segment Man page Source code
segmentCLI Source code
segmentsToBed Source code
seq.pal Source code
setDim_unsafe Source code
setDimnames_unsafe Source code
simulateCLI Source code
smallWeightHamiltonianPath Source code
squareCoords Source code
statesToSegments Source code
statesToSegments_helper Source code
stretchLens Source code
tabf Source code
tabf2 Source code
testMeanAndMedian Source code
testSortCounts Source code
toRGBVector Source code
toString_safe Source code
usr2in Source code
validateAutoColors Source code
validateBamtab Source code
validateCList Source code
validateColors Source code
validateCounts Source code
validateModel Source code
validateOutdir Source code
validatePath Source code
validateVmat Source code
writeColors Source code
writeCounts Source code
writeCountsTXT Source code
writeModel Source code
writeRegions Source code
lamortenera/epicseg documentation built on July 17, 2017, 1:25 a.m.