Files in lamortenera/epicseg

Chromatin Segmentation in R

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/RcppExports.R R/argparsing.R R/avgStateProfile.R R/bamtab.R R/colors.R R/counts.R R/getcounts.R R/html.R R/main.R R/model.R R/myheat.R R/normalization.R R/normalizecounts.R R/regions.R R/report.R R/segment.R README.md inst/examples/cliExamples.Rmd inst/examples/examples.R

inst/extdata/5s_model.txt

inst/extdata/5s_segmentation.bed

inst/extdata/H3K36me3.bam

inst/extdata/H3K36me3.bam.bai

inst/extdata/H3K4me3.bam

inst/extdata/H3K4me3.bam.bai

inst/extdata/H3K9me3.bam

inst/extdata/H3K9me3.bam.bai

inst/extdata/contigs.bed

inst/extdata/counts.txt

inst/extdata/genes.bed

inst/extdata/uflow_minimal.Rdata

inst/manual.html

man/epicseg.Rd man/getcounts.Rd man/normalizecounts.Rd man/refineRegions.Rd man/report.Rd man/segment.Rd

src/Makevars

src/RcppExports.cpp

src/array.h

src/clist.h

src/misc.cpp

src/normalization.cpp

src/segments.cpp

src/tabbing.h

tests/testthat.R tests/testthat/test-RI.R tests/testthat/test-_CLI.R tests/testthat/test-normalization.R tests/testthat/test-write-read.R tests/testthat/utils.R

lamortenera/epicseg documentation built on May 20, 2019, 7:34 p.m.