mle.getEncodingLength: Minimum encoding length (MLE)

Description Usage Arguments Examples

View source: R/mle.getEncodingLength.r

Description

This function calculates the mininmum encoding length associated with a subset of variables against a background knowledge graph.

Usage

1
mle.getEncodingLength(ig, path, pvals, ptID)

Arguments

ig

- An igraph object of the background knowledge graph.

path

- The filepath to a directory you will store patient-specific RData files in.

pvals

- The matrix that gives the perturbation strength significance for all variables (columns) for each patient (rows)

ptID

- The row name in data.pvals corresponding to the patient you specifically want encoding information for.

Examples

1
mle.getEncodingLength(int patientNum, matrix data.pvals, int kmax)

lashmore/MolEndoMatch documentation built on May 5, 2019, 8:02 p.m.