mle.getPatientBitstrings: Generate patient-specific bitstrings from adaptive network...

In lashmore/MolEndoMatch: Molecular Endophenotype Patient Matchmaking

Description

This function calculates the bitstrings (1 is a hit; 0 is a miss) associated with the adaptive network walk made by the diffusion algorithm trying to find the variables in the encoded subset, against the background knowledge graph.

Usage

mle.getPatientBitstrings(ig, path, data.pvals, patient)

Arguments

ig	- An igraph object of the background knowledge graph.
path	- The filepath to a directory you will store patient-specific RData files in.
data.pvals	- The matrix that gives the perturbation strenght significance for all variables (columns) for each patient (rows)
patient	- The row number (integer) in data.pvals associated with the patient being processed.

Examples

mle.getPatientBitstrings(ig, path, data.pvals, patient)

lashmore/MolEndoMatch documentation built on May 5, 2019, 8:02 p.m.