validPEAKS-massFlowTemplate-method: Validate aligned peaks and their corresponding peak-groups

In lauzikaite/massFlowR: LC-MS Data Pre-Processing

Description

Validate aligned peaks and their corresponding peak-groups

Usage

## S4 method for signature 'massFlowTemplate'
validPEAKS(
  object,
  out_dir = NULL,
  min_samples_prop = NULL,
  cor_thr = 0.75,
  ncores = 2
)

Arguments

object	massFlowTemplate class object.
out_dir	character specifying desired directory for output.
min_samples_prop	numeric specifying the minimum percentage of samples in which peak has to be detected in order to be considered.
cor_thr	numeric defining Pearson correlation coefficient threshold for inter-sample correlation between peaks (default set to 0.75).
ncores	numeric defining number of cores to use for parallelisation.

Value

Method returns validated peak-groups.

See Also

buildTMP, alignPEAKS, massFlowTemplate-class

lauzikaite/massFlowR documentation built on April 29, 2020, 9:45 a.m.