src/TMB/compile.R

In lawlerem/staRVe: Spatio-Temporal Analysis of Research surVEy data

tmb_flags <- commandArgs(trailingOnly = TRUE)
if( length(tmb_flags) == 0 ) tmb_flags <- ""

## if(length(Sys.glob("*.cpp")) > 0) {
##   # compile tmb models
##   invisible(sapply(Sys.glob("*.cpp"),
##                    TMB::compile, PKG_CXXFLAGS = tmb_flags,
##                    safebounds = FALSE, safeunload = FALSE))
##   # copy dynlibs to src
##   invisible(file.copy(from = Sys.glob(paste0("*", .Platform$dynlib.ext)),
##                       to = "..", overwrite = TRUE))
## }

tmb_name <- "starve_TMB"
if( file.exists(paste0(tmb_name, ".cpp")) ) {
  TMB::compile(
    file = paste0(tmb_name, ".cpp"),
    PKG_CXXFLAGS = tmb_flags,
    safebounds = FALSE,
    safeunload = FALSE
  )
  file.copy(
    from = paste0(tmb_name, .Platform$dynlib.ext),
    to = "..",
    overwrite = TRUE
  )
}

# cleanup done in ../Makevars[.win]