Files in lbroseus/SIRFindeR
More stable and accurate estimation of Intron Retention levels
DESCRIPTION
LICENSE
NAMESPACE
R/Annot_createIntronGR.R
R/Estim_LRratio.R
R/Estim_SIRratio.R
R/Estim_SIRratio_wrapper.R
R/Estim_curateIntrons.R
R/Estim_defineIntrons.R
R/Estim_prepareJunctionSites.R
R/Estim_readCounting.R
R/LR_callIR.R
README.md
inst/extdata/IRevents.txt
inst/extdata/IRrates.txt
inst/extdata/ResultsByIntron.txt
man/appendIntronicCounts.Rd
man/bootstrapJunctionCounts.Rd
man/bootstrapMean.Rd
man/bootstrapSample.Rd
man/buildExpSIRmatrix.Rd
man/callIRevents.Rd
man/computeIRrates.Rd
man/computeRegionOverlap.Rd
man/computeSIRratio.Rd
man/createIntronGR.Rd
man/curateIntrons.Rd
man/defineIntronicIntervals.Rd
man/estimateSIRratio.Rd
man/liftItOver.Rd
man/mergeJunctionFiles.Rd
man/mergebyIntron.Rd
man/prepareJunctionSites.Rd
man/prepareSIRmatrix.Rd
vignettes/SIRFindeR.Rmd
vignettes/SIRFindeR.html
vignettes/SIRFindeR.pdf
