liftItOver: Internal function for genome liftover
In lbroseus/SIRFindeR: More stable and accurate estimation of Intron Retention levels
Description
Usage
Arguments
Value
View source: R/Estim_curateIntrons.R
Description
This function performs genome lift over.
It is simply a wrapper for ['rtracklayer::liftover'].
Usage
1
liftItOver(chainPath, oldIntervals)
Arguments
chainPath
A Chain object, usually imported with ['import.chain'], or something coercible to one.
oldIntervals
A GRanges object with genomic intervals to lift over.
Value
If out_file=NULL, a GRanges object containing intervals after lift over;
otherwise the GRanges object will be saved in out_file.
lbroseus/SIRFindeR documentation built on Nov. 30, 2020, 11:06 a.m.
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Description Usage Arguments Value
View source: R/Estim_curateIntrons.R
Description
This function performs genome lift over. It is simply a wrapper for ['rtracklayer::liftover'].
Usage
1 | liftItOver(chainPath, oldIntervals)
|
Arguments
chainPath |
A |
oldIntervals |
A |
Value
If out_file=NULL, a GRanges object containing intervals after lift over; otherwise the GRanges object will be saved in out_file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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