mergeJunctionFiles: Internal function for merging introns detected by STAR

In lbroseus/SIRFindeR: More stable and accurate estimation of Intron Retention levels

Description

This junctions merges junction files

Usage

mergeJunctionFiles(
  junctionFiles,
  min_map_cross_junc = 5,
  min_novel_intron_width = 30,
  verbose = TRUE
)

Arguments

junctionFiles	A character vector with STAR output files to be merged (.tab)
min_map_cross_junc	Minimal number of reads supporting a junction to consider a novel intron
min_novel_intron_width	Minimal width for an intronic interval to be kept
verbose	(Default TRUE) Whether to print summary messages

Value

A data.frame containing intronic intervals detected by STAR and junction counts summarised over all input junction files

See Also

* ['defineIntronicIntervals()'] to define the intronic intervals (...)

lbroseus/SIRFindeR documentation built on Nov. 30, 2020, 11:06 a.m.