computeRegionOverlap: Compute the fraction of an intron contained in a long read
In lbroseus/SIRFindeR: More stable and accurate estimation of Intron Retention levels
Description
Usage
Arguments
Value
Description
This function computes the proportion
of an input genomic interval (eg: an intron or an exon) that is contained in a read.
NB: it takes into account possible gaps and splicing in read alignments.
Usage
1
computeRegionOverlap(align.gr, intron.gr)
Arguments
align.gr
A GRanges object describing a read alignment (eg: extracted from a bam file)
intron.gr
A GRanges object describing a genomic interval to compare to align.gr
Value
The fraction of intron.gr contained in the sequence align.gr
lbroseus/SIRFindeR documentation built on Nov. 30, 2020, 11:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
This function computes the proportion of an input genomic interval (eg: an intron or an exon) that is contained in a read.
NB: it takes into account possible gaps and splicing in read alignments.
Usage
1 | computeRegionOverlap(align.gr, intron.gr)
|
Arguments
align.gr |
A |
intron.gr |
A |
Value
The fraction of intron.gr contained in the sequence align.gr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.