derfinder-package: derfinder: Annotation-agnostic differential expression...

In lcolladotor/derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

Description

This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.

Author(s)

Maintainer: Leonardo Collado-Torres [e-mail] (ORCID)

Authors:

• Andrew E. Jaffe [e-mail] (ORCID)

• Jeffrey T. Leek [e-mail] (ORCID) [thesis advisor]

Other contributors:

• Alyssa C. Frazee [e-mail] [contributor]

See Also

Useful links:

• https://github.com/lcolladotor/derfinder

• Report bugs at https://support.bioconductor.org/t/derfinder/

lcolladotor/derfinder documentation built on May 4, 2024, 5:38 p.m.