derfinder-package: derfinder: Annotation-agnostic differential expression...
In lcolladotor/derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
derfinder-package R Documentation
derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Description
This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.
Author(s)
Maintainer: Leonardo Collado-Torres lcolladotor@gmail.com (ORCID)
Authors:
Andrew E. Jaffe andrew.jaffe@libd.org (ORCID)
Jeffrey T. Leek jtleek@gmail.com (ORCID) [thesis advisor]
Other contributors:
Alyssa C. Frazee alyssa.frazee@gmail.com [contributor]
See Also
Useful links:
lcolladotor/derfinder documentation built on Dec. 17, 2024, 4:53 p.m.
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| derfinder-package | R Documentation |
derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Description
This package provides functions for annotation-agnostic differential expression analysis of RNA-seq data. Two implementations of the DER Finder approach are included in this package: (1) single base-level F-statistics and (2) DER identification at the expressed regions-level. The DER Finder approach can also be used to identify differentially bounded ChIP-seq peaks.
Author(s)
Maintainer: Leonardo Collado-Torres lcolladotor@gmail.com (ORCID)
Authors:
Andrew E. Jaffe andrew.jaffe@libd.org (ORCID)
Jeffrey T. Leek jtleek@gmail.com (ORCID) [thesis advisor]
Other contributors:
Alyssa C. Frazee alyssa.frazee@gmail.com [contributor]
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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