genomicState: Genomic State for Hsapiens.UCSC.hg19.knownGene
In lcolladotor/derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
genomicState R Documentation
Genomic State for Hsapiens.UCSC.hg19.knownGene
Description
Pre-computed genomic state for Hsapiens UCSC hg19 knownGene annotation built
using makeGenomicState for
TxDb.Hsapiens.UCSC.hg19.knownGene version 2.14.0. The object has been subset
for chr21 only.
Format
A GRangesList with two components.
- fullGenome
classifies each region as either being exon, intron or
intergenic.
- codingGenome
classfies the regions as being promoter, exon, intro,
5UTR, 3UTR or intergenic.
See Also
makeGenomicState
lcolladotor/derfinder documentation built on May 4, 2024, 5:38 p.m.
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| genomicState | R Documentation |
Genomic State for Hsapiens.UCSC.hg19.knownGene
Description
Pre-computed genomic state for Hsapiens UCSC hg19 knownGene annotation built using makeGenomicState for TxDb.Hsapiens.UCSC.hg19.knownGene version 2.14.0. The object has been subset for chr21 only.
Format
A GRangesList with two components.
- fullGenome
classifies each region as either being exon, intron or intergenic.
- codingGenome
classfies the regions as being promoter, exon, intro, 5UTR, 3UTR or intergenic.
See Also
makeGenomicState
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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