genomeData: Genome samples processed data

genomeDataR Documentation

Genome samples processed data


10kb region from chr21 processed for 31 RNA-seq samples described in genomeInfo. The TopHat BAM files are included in the package and this is the output of loadCoverage applied to it. For more information check the example of loadCoverage.


A list with two components.


is a DataFrame object where each column represents a sample.


is a logical Rle with the positions of the chromosome that passed a cutoff of 0.


  1. Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras J-B, Stephens M, Gilad Y, Pritchard JK. Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature 2010 Apr.

  2. Montgomery SB, Sammeth M, Gutierrez-Arcelus M, Lach RP, Ingle C, Nisbett J, Guigo R, Dermitzakis ET. Transcriptome genetics using second generation sequencing in a Caucasian population. Nature 2010 Mar.

See Also

loadCoverage, genomeInfo

lcolladotor/derfinder documentation built on May 4, 2024, 5:38 p.m.