genomeRegions: Candidate DERs for example data
In lcolladotor/derfinder: Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach

genomeRegions

R Documentation

Candidate DERs for example data

Candidate Differentially Expressed Regions (DERs) for the example data. For more information check calculatePvalues.

A list with four components.

regions: a GRanges object with the candidate DERs.
nullStats: a numeric Rle with the mean F-statistics for the null DERs found from the permutations.
nullWidths: an integer Rle with the width of each null candidate DER.
nullPermutation: an integer Rle with the permutation number for each candidate DER. It identifies which permutation cycle created the null candidate DER.