BuildKNNGfrkn: Builds k-nearest neighbor graph

In ldvroditi/Franken: Clustering algorithm suitable for high-dimensional and high-throughput data

Description

Builds k-nearest neighbor graph

Usage

BuildKNNGfrkn(fsom, kn, dist_method, silent = FALSE, tSNE = FALSE)

Arguments

fsom	flowSOM object, as constructed by the ReadInputfrkn function
kn	Number of nearest neighbors used to build the mutual KNN graph
dist_method	Distance or Similarity function used to build KNN graph. Extended Jaccard Similarity is the recommended default
silent	If TRUE, no progress updates will be printed
tSNE	If TRUE, an alternative tSNE layout is computed as well

Value

Subsetted and updated flowSOM object

ldvroditi/Franken documentation built on April 18, 2021, 4:54 p.m.