walk_metaclustering: Performs walktrap clustering of knn graph on SOM nodes

In ldvroditi/Franken: Clustering algorithm suitable for high-dimensional and high-throughput data

Description

Performs walktrap clustering of knn graph on SOM nodes

Usage

walk_metaclustering(fsom, saveDir, fseed)

Arguments

fsom	flowSOM object, as constructed by the ReadInputfrkn function. Make sure to run BuildKNNGfrkn first
saveDir	Path to directory in which to save results
fseed	Walktrap finds communities in a graph via random walks which means results will differ slightly with each run. With fseed you can set your own seed for reproducilibity

Value

A file called metaclusterIds.txt containing clustering ids for each cell and a object including clustering ids for each SOM node

ldvroditi/Franken documentation built on April 18, 2021, 4:54 p.m.