GetClusters: Get cluster label for every individual cells
In ldvroditi/Franken: Clustering algorithm suitable for high-dimensional and high-throughput data
Description
Usage
Arguments
Value
Examples
Description
Get cluster label for every individual cells
Usage
1
GetClusters(fsom)
Arguments
fsom
FlowSOM object as generated by the Franken function
Value
vector label for every cell
Examples
1
2
3
4
5
6
Define path to directory with your .fcs files
DataDir = ''
fileName = list.files(path = DataDir, pattern = "\\.fcs$")
readin_files = ReadInput(fileNames, scale = FALSE)
frk_ls = Franken(readin_files, marker_ids=c(9,12,14:18))
cluster_labels = GetClusters(frk_ls)
ldvroditi/Franken documentation built on April 18, 2021, 4:54 p.m.
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Description Usage Arguments Value Examples
Description
Get cluster label for every individual cells
Usage
1 | GetClusters(fsom)
|
Arguments
fsom |
FlowSOM object as generated by the Franken function |
Value
vector label for every cell
Examples
1 2 3 4 5 6 | Define path to directory with your .fcs files
DataDir = ''
fileName = list.files(path = DataDir, pattern = "\\.fcs$")
readin_files = ReadInput(fileNames, scale = FALSE)
frk_ls = Franken(readin_files, marker_ids=c(9,12,14:18))
cluster_labels = GetClusters(frk_ls)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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