R/deedee-data.R

In lea-rothoerl/DeeDee: Comparative Evaluation and Visualization of Differential Expression Analyses

#' A sample `DESeqResults` object
#'
#' A sample `DESeqResults` object, generated with `DESeq2`
#'
#' @details This `DESeqResults` object contains the results of a Differential
#' Expression Analysis performed on data from the `macrophage` package, more
#' precisely contrasting the counts from naive macrophage to those associated
#' with IFNg.
#'
#' The code to create said object can be found in the folder `/inst/scripts` in
#' the DeeDee package, the file is called `generate_data.R`.
#'
#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene
#' expression indicate a role for enhancer priming in immune response",
#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
#'
#' @name IFNg_naive
#' @docType data
NULL


#' A sample `DESeqResults` object
#'
#' A sample `DESeqResults` object, generated with `DESeq2`
#'
#' @details This `DESeqResults` object contains the results of a Differential
#' Expression Analysis performed on data from the `macrophage` package, more
#' precisely contrasting the counts from macrophage associated with IFNg to
#' those associated with IFNg and Salmonella.
#'
#' The code to create said object can be found in the folder `/inst/scripts` in
#' the DeeDee package, the file is called `generate_data.R`.
#'
#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene
#' expression indicate a role for enhancer priming in immune response",
#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
#'
#' @name IFNg_both
#' @docType data
NULL


#' A sample `DESeqResults` object
#'
#' A sample `DESeqResults` object, generated with `DESeq2`
#'
#' @details This `DESeqResults` object contains the results of a Differential
#' Expression Analysis performed on data from the `macrophage` package, more
#' precisely contrasting the counts from naive macrophage to those associated
#' with Salmonella.
#'
#' The code to create said object can be found in the folder `/inst/scripts` in
#' the DeeDee package, the file is called `generate_data.R`.
#'
#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene
#' expression indicate a role for enhancer priming in immune response",
#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
#'
#' @name Salm_naive
#' @docType data
NULL



#' A sample `DESeqResults` object
#'
#' A sample `DESeqResults` object, generated with `DESeq2`
#'
#' @details This `DESeqResults` object contains the results of a Differential
#' Expression Analysis performed on data from the `macrophage` package, more
#' precisely contrasting the counts from macrophage associated with Salmonella
#' to those associated with IFNg and Salmonella.
#'
#' The code to create said object can be found in the folder `/inst/scripts` in
#' the DeeDee package, the file is called `generate_data.R`.
#'
#' @references Alasoo, et al. "Shared genetic effects on chromatin and gene
#' expression indicate a role for enhancer priming in immune response",
#' Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.
#'
#' @name Salm_both
#' @docType data
NULL