Files in lefeverde/basicOmics
Package for basic statistical tests on Omics data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/analysis.R
R/enrichment_wrappers.R
R/naive_regression_wrappers.R
R/pca_categorical_triplot.R
R/pca_functions_main.R
R/pipeline_wrappers.R
R/plotting_functions.R
R/uniquefy.R
R/util_functions.R
basicOmics.Rproj
data-raw/example_raw_data.RData
generating_example_data.R
inst/extdata/example_dge_object.rds
inst/extdata/example_fit_object.rds
inst/extdata/example_voom_object.rds
inst/extdata/expected_limma_res.rds
man/basic_linear_regression.Rd
man/basic_logistic_regression.Rd
man/better_model_matrix.Rd
man/create_test_dds.Rd
man/dge_wrapper.Rd
man/enrich_go_wrapper.Rd
man/enrich_pathway_wrapper.Rd
man/enrich_wrapper.Rd
man/ensembl_to_entrez_genes.Rd
man/expression_summaries.Rd
man/gene_quantile_filter.Rd
man/get_deseq2_results.Rd
man/get_geneSets.Rd
man/get_lfc.Rd
man/get_limma_results.Rd
man/get_overlap_matix.Rd
man/increase_xy_lims.Rd
man/lmlist_to_df.Rd
man/make_pca_plot_data.Rd
man/pca_categorical_triplot.Rd
man/pca_data_wrapper.Rd
man/pca_plotter.Rd
man/select_genes_by_variance.Rd
man/split_by_reg.Rd
man/split_fix_names.Rd
man/uniquefy_base.Rd
man/uniquefy_by_abs_max.Rd
man/uniquefy_by_variance.Rd
man/venn_maker.Rd
man/volcano_plotter.Rd
man/voom_sva_wrapper.Rd
man/wilcoxOrKruskalOnA.Rd
tests/testthat.R
tests/testthat/test_analysis.R
tests/testthat/test_uniquefy.R
tests/testthat/test_util_functions.R
vignettes/.gitignore
vignettes/running_pipeline_on_example_data.Rmd
