signisite_zmat: Run the SigniSite workflow
In leonjessen/SigniSite: Analysis of Genotype-phenotype correlations in protein multiple sequence alignments
Description
Usage
Arguments
Value
Examples
View source: R/signisite_zmat.R
Description
Run the SigniSite workflow
Usage
1
signisite_zmat(file, method = "bonferroni", alpha = 0.05)
Arguments
file
A multiple sequence alignment in FASTA format
method
method for correcting for multiple testing, one of c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"), see ?p.adjust for more. Default: bonferroni
alpha
the level of significance. Default: 0.05
Value
A matrix of SigniSite z-scores, corrected for multiple testing and truncated to significant positions
Examples
1
signisite_zmat(file = 'path/to/my/msa_file.fsa')
leonjessen/SigniSite documentation built on May 2, 2020, 6:31 a.m.
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Description Usage Arguments Value Examples
View source: R/signisite_zmat.R
Description
Run the SigniSite workflow
Usage
1 | signisite_zmat(file, method = "bonferroni", alpha = 0.05)
|
Arguments
file |
A multiple sequence alignment in FASTA format |
method |
method for correcting for multiple testing, one of c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"), see ?p.adjust for more. Default: bonferroni |
alpha |
the level of significance. Default: 0.05 |
Value
A matrix of SigniSite z-scores, corrected for multiple testing and truncated to significant positions
Examples
1 | signisite_zmat(file = 'path/to/my/msa_file.fsa')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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