Files in levisc8/ipmr
Integral Projection Models

.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/build-website.yml
.github/workflows/testthat.yaml
.github/workflows/vignette_checker.yml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/RcppExports.R R/data_docs.R R/define_implementation.R R/define_kernel.R R/eviction.R R/generics.R R/init_ipm.R R/internal-age_size.R R/internal-create_iteration.R R/internal-lin_alg.R R/internal-make_ipm.R R/internal-model_iteration.R R/internal-par_sets.R R/ipmr-package.R R/make_ipm.R R/make_ipm_report.R R/on_load_on_attach.R R/utils-age_size.R R/utils-dom-states.R R/utils-export.R R/utils-internal.R R/utils-pipe.R R/utils-stoch.R R/utils-tidy-eval.R README.Rmd README.md
_pkgdown.yml
codecov.yml
cran-comments.md data-raw/calc-pub-count.R data-raw/create_example_data.R
data-raw/iceplant_ex.csv
data/gen_di_det_ex.rda
data/iceplant_ex.rda
data/monocarp_proto.rda
data/sim_di_det_ex.rda
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/age_x_size.html
docs/articles/density-dependence.html
docs/articles/general-ipms.html
docs/articles/generic-funs.html
docs/articles/generic-progress.html
docs/articles/index-notation.html
docs/articles/index.html
docs/articles/ipmr-introduction.html
docs/articles/proto-ipms.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/.data.html
docs/reference/Rplot001.png
docs/reference/accessors.html
docs/reference/as.matrix.ipmr_ipm.html
docs/reference/as_matrix.html
docs/reference/check_convergence-1.png
docs/reference/check_convergence.html
docs/reference/collapse_pop_state.html
docs/reference/conv_plot.html
docs/reference/conv_plot.ipmr_ipm.html
docs/reference/define_domains.html
docs/reference/define_env_state.html
docs/reference/define_pop_state.html
docs/reference/define_star.html
docs/reference/discrete_extrema.html
docs/reference/discretize_pop_vector.html
docs/reference/domains.default.html
docs/reference/domains.proto_ipm.html
docs/reference/eigenvectors.html
docs/reference/enexpr.html
docs/reference/enexprs.html
docs/reference/enquo.html
docs/reference/enquos.html
docs/reference/ensym.html
docs/reference/ensyms.html
docs/reference/eviction.html
docs/reference/expr.html
docs/reference/exprs.html
docs/reference/format_mega_kernel.age_x_size_ipm.html
docs/reference/format_mega_kernel.default.html
docs/reference/gen_di_det.html
docs/reference/index.html
docs/reference/init_ipm.html
docs/reference/int_mesh.html
docs/reference/int_mesh.ipmr_ipm.html
docs/reference/ipm_report.html
docs/reference/ipm_to_df.array.html
docs/reference/ipm_to_df.default.html
docs/reference/ipm_to_df.html
docs/reference/is_conv_to_asymptotic.ipmr_ipm.html
docs/reference/kernel-definitions.html
docs/reference/kernel_formulae.default.html
docs/reference/kernel_formulae.html
docs/reference/kernel_formulae.proto_ipm.html
docs/reference/lambda.general_dd_det_ipm.html
docs/reference/lambda.general_dd_stoch_kern_ipm.html
docs/reference/lambda.general_dd_stoch_param_ipm.html
docs/reference/lambda.general_di_det_ipm.html
docs/reference/lambda.general_di_stoch_kern_ipm.html
docs/reference/lambda.general_di_stoch_param_ipm.html
docs/reference/lambda.html
docs/reference/lambda.simple_dd_det_ipm.html
docs/reference/lambda.simple_dd_stoch_kern_ipm.html
docs/reference/lambda.simple_dd_stoch_param_ipm.html
docs/reference/lambda.simple_di_det_ipm.html
docs/reference/lambda.simple_di_stoch_kern_ipm.html
docs/reference/lambda.simple_di_stoch_param_ipm.html
docs/reference/left_ev.general_di_det_ipm.html
docs/reference/left_ev.general_di_stoch_kern_ipm.html
docs/reference/left_ev.general_di_stoch_param_ipm.html
docs/reference/left_ev.html
docs/reference/left_ev.simple_di_det_ipm.html
docs/reference/left_ev.simple_di_stoch_kern_ipm.html
docs/reference/left_ev.simple_di_stoch_param_ipm.html
docs/reference/left_mult.html
docs/reference/make_impl_args_list.html
docs/reference/make_ipm.general_dd_det.html
docs/reference/make_ipm.general_dd_stoch_kern.html
docs/reference/make_ipm.general_dd_stoch_param.html
docs/reference/make_ipm.general_di_det.html
docs/reference/make_ipm.general_di_stoch_kern.html
docs/reference/make_ipm.general_di_stoch_param.html
docs/reference/make_ipm.html
docs/reference/make_ipm.simple_dd_det.html
docs/reference/make_ipm.simple_dd_stoch_kern.html
docs/reference/make_ipm.simple_dd_stoch_param.html
docs/reference/make_ipm.simple_di_det.html
docs/reference/make_ipm.simple_di_stoch_kern.html
docs/reference/make_ipm.simple_di_stoch_param.html
docs/reference/make_ipm_report.default.html
docs/reference/make_ipm_report.ipmr_ipm.html
docs/reference/make_ipm_report_body.html
docs/reference/make_iter_kernel.html
docs/reference/mat_power.html
docs/reference/matrix-power.html
docs/reference/mean_kernel.html
docs/reference/new_fun_form.html
docs/reference/parameters.default.html
docs/reference/parameters.html
docs/reference/parameters.proto_ipm.html
docs/reference/pipe.html
docs/reference/plot.general_di_det_ipm.html
docs/reference/plot.simple_di_det_ipm.html
docs/reference/plot.simple_di_stoch_kern_ipm.html
docs/reference/plot.simple_di_stoch_param_ipm.html
docs/reference/plot_star.html
docs/reference/pop_state.default.html
docs/reference/pop_state.html
docs/reference/pop_state.proto_ipm.html
docs/reference/predict_methods.html
docs/reference/print.general_dd_det_ipm.html
docs/reference/print.general_dd_stoch_kern_ipm.html
docs/reference/print.general_dd_stoch_param_ipm.html
docs/reference/print.general_di_det_ipm.html
docs/reference/print.general_di_stoch_kern_ipm.html
docs/reference/print.general_di_stoch_param_ipm.html
docs/reference/print.simple_dd_det_ipm.html
docs/reference/print.simple_dd_stoch_kern_ipm.html
docs/reference/print.simple_dd_stoch_param_ipm.html
docs/reference/print.simple_di_det_ipm.html
docs/reference/print.simple_di_stoch_kern_ipm.html
docs/reference/print.simple_di_stoch_param_ipm.html
docs/reference/print_star.html
docs/reference/proto_ex.html
docs/reference/quo.html
docs/reference/quo_name.html
docs/reference/quos.html
docs/reference/raw_data_ex.html
docs/reference/right_ev.general_di_det_ipm.html
docs/reference/right_ev.general_di_stoch_kern_ipm.html
docs/reference/right_ev.general_di_stoch_param_ipm.html
docs/reference/right_ev.simple_di_det_ipm.html
docs/reference/right_ev.simple_di_stoch_kern_ipm.html
docs/reference/right_ev.simple_di_stoch_param_ipm.html
docs/reference/right_mult.html
docs/reference/sim_di_det.html
docs/reference/sym.html
docs/reference/syms.html
docs/reference/tidyeval.html
docs/reference/vital_rate_exprs.default.html
docs/reference/vital_rate_exprs.html
docs/reference/vital_rate_exprs.proto_ipm.html
docs/reference/vital_rate_funs.html
docs/reference/vital_rate_funs.ipmr_ipm.html
docs/sitemap.xml
index.Rmd index.md
inst/CITATION
inst/WORDLIST
ipmr.Rproj
man/accessors.Rd man/as_matrix.Rd man/check_convergence.Rd man/collapse_pop_state.Rd man/define_star.Rd man/eigenvectors.Rd man/eviction.Rd man/gen_di_det.Rd man/init_ipm.Rd man/ipm_report.Rd man/ipm_to_df.Rd man/kernel-definitions.Rd man/lambda.Rd man/make_ipm.Rd man/make_iter_kernel.Rd man/matrix-power.Rd man/mean_kernel.Rd man/pipe.Rd man/plot_star.Rd man/predict_methods.Rd man/print_star.Rd man/proto_ex.Rd man/raw_data_ex.Rd man/right_mult.Rd man/sim_di_det.Rd man/tidyeval.Rd paper/Analyses/R/bogdan_etal_rebuild.R paper/Analyses/R/childs_etal_rebuild.R paper/Analyses/R/compagnoni_etal_rebuild.R paper/Analyses/R/figure_sub_panels.R paper/Analyses/R/padr_helpers.R paper/Analyses/R/padrino_subset.R paper/Drafts/arxiv_preprint.pdf paper/Drafts/ipmr_paper_outline.Rmd paper/SI/R/00_case_study_1.Rmd paper/SI/R/01_case_study_2.Rmd paper/SI/R/02_SOM.Rmd paper/SI/R/02_SOM.pdf
paper/SI/R/header_som.tex
src/.gitignore
src/RcppExports.cpp
src/mat_to_df_impl.cpp
src/mean_kernel_impl.cpp
src/update_pop_state.cpp
tests/sim_tests/dd_sandbox_2.R tests/sim_tests/sim-simple-ndd-det-monocarp.R tests/sim_tests/sim-simple-ndd-det.R tests/sim_tests/sim-simple-ndd-stoch-kern.R tests/sim_tests/test-density_dependence.R tests/spelling.R tests/testthat.R tests/testthat/_snaps/generics.md tests/testthat/helper-funs.R tests/testthat/test-age_size.R tests/testthat/test-define_star_funs.R tests/testthat/test-exported_utils.R tests/testthat/test-general_dd_det.R tests/testthat/test-general_dd_stoch_kern.R tests/testthat/test-general_dd_stoch_param.R tests/testthat/test-general_di_det.R tests/testthat/test-general_di_stoch_kern.R tests/testthat/test-general_di_stoch_param.R tests/testthat/test-generics.R tests/testthat/test-internal_funs.R tests/testthat/test-make_ipm_report.R tests/testthat/test-predict_methods.R tests/testthat/test-simple_dd_det.R tests/testthat/test-simple_dd_stoch_kern.R tests/testthat/test-simple_dd_stoch_param.R tests/testthat/test-simple_di_det.R tests/testthat/test-simple_di_stoch_kern.R tests/testthat/test-simple_di_stoch_param.R tests/testthat/test-sum.R tests/vignettes/MEE_case_study_1.R tests/vignettes/MEE_case_study_2.R tests/vignettes/age_x_size.R tests/vignettes/density-dependence.R tests/vignettes/general-ipms.R tests/vignettes/index-notation.R tests/vignettes/ipmr-intro.R tests/vignettes/test_vignettes.R
vignettes/.gitignore
vignettes/age_x_size.Rmd vignettes/density-dependence.Rmd vignettes/general-ipms.Rmd vignettes/generic-funs.Rmd vignettes/index-notation.Rmd vignettes/ipmr-introduction.Rmd vignettes/proto-ipms.Rmd
levisc8/ipmr documentation built on June 9, 2025, 6:54 p.m.