Files in levisc8/ipmr

Integral Projection Models

.Rbuildignore

.gitattributes

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/build-website.yml

.github/workflows/testthat.yaml

.github/workflows/vignette_checker.yml

.gitignore

CODE_OF_CONDUCT.md

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/RcppExports.R R/data_docs.R R/define_implementation.R R/define_kernel.R R/eviction.R R/generics.R R/init_ipm.R R/internal-age_size.R R/internal-create_iteration.R R/internal-lin_alg.R R/internal-make_ipm.R R/internal-model_iteration.R R/internal-par_sets.R R/ipmr-package.R R/make_ipm.R R/make_ipm_report.R R/on_load_on_attach.R R/utils-age_size.R R/utils-dom-states.R R/utils-export.R R/utils-internal.R R/utils-pipe.R R/utils-stoch.R R/utils-tidy-eval.R README.Rmd README.md

_pkgdown.yml

codecov.yml

cran-comments.md data-raw/calc-pub-count.R data-raw/create_example_data.R

data-raw/iceplant_ex.csv

data/gen_di_det_ex.rda

data/iceplant_ex.rda

data/monocarp_proto.rda

data/sim_di_det_ex.rda

docs/404.html

docs/CODE_OF_CONDUCT.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/age_x_size.html

docs/articles/density-dependence.html

docs/articles/general-ipms.html

docs/articles/generic-funs.html

docs/articles/generic-progress.html

docs/articles/index-notation.html

docs/articles/index.html

docs/articles/ipmr-introduction.html

docs/articles/proto-ipms.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/accessors.html

docs/reference/as_matrix.html

docs/reference/check_convergence-1.png

docs/reference/check_convergence.html

docs/reference/collapse_pop_state.html

docs/reference/define_star.html

docs/reference/eigenvectors.html

docs/reference/eviction.html

docs/reference/gen_di_det.html

docs/reference/index.html

docs/reference/init_ipm.html

docs/reference/ipm_report.html

docs/reference/ipm_to_df.html

docs/reference/kernel-definitions.html

docs/reference/lambda.html

docs/reference/make_ipm.html

docs/reference/make_iter_kernel.html

docs/reference/matrix-power.html

docs/reference/mean_kernel.html

docs/reference/pipe.html

docs/reference/plot_star.html

docs/reference/predict_methods.html

docs/reference/print_star.html

docs/reference/proto_ex.html

docs/reference/raw_data_ex.html

docs/reference/right_mult.html

docs/reference/sim_di_det.html

docs/reference/tidyeval.html

docs/sitemap.xml

index.Rmd index.md

inst/CITATION

inst/WORDLIST

ipmr.Rproj

man/accessors.Rd man/as_matrix.Rd man/check_convergence.Rd man/collapse_pop_state.Rd man/define_star.Rd man/eigenvectors.Rd man/eviction.Rd man/gen_di_det.Rd man/init_ipm.Rd man/ipm_report.Rd man/ipm_to_df.Rd man/kernel-definitions.Rd man/lambda.Rd man/make_ipm.Rd man/make_iter_kernel.Rd man/matrix-power.Rd man/mean_kernel.Rd man/pipe.Rd man/plot_star.Rd man/predict_methods.Rd man/print_star.Rd man/proto_ex.Rd man/raw_data_ex.Rd man/right_mult.Rd man/sim_di_det.Rd man/tidyeval.Rd paper/Analyses/R/bogdan_etal_rebuild.R paper/Analyses/R/childs_etal_rebuild.R paper/Analyses/R/compagnoni_etal_rebuild.R paper/Analyses/R/figure_sub_panels.R paper/Analyses/R/padr_helpers.R paper/Analyses/R/padrino_subset.R paper/Drafts/arxiv_preprint.pdf paper/Drafts/ipmr_paper_outline.Rmd paper/SI/R/00_case_study_1.Rmd paper/SI/R/00_case_study_1.pdf paper/SI/R/01_case_study_2.Rmd paper/SI/R/01_case_study_2.pdf paper/SI/R/02_SOM.Rmd paper/SI/R/02_SOM.pdf

paper/SI/R/header_som.tex

src/.gitignore

src/RcppExports.cpp

src/mat_to_df_impl.cpp

src/mean_kernel_impl.cpp

src/update_pop_state.cpp

tests/sim_tests/dd_sandbox_2.R tests/sim_tests/sim-simple-ndd-det-monocarp.R tests/sim_tests/sim-simple-ndd-det.R tests/sim_tests/sim-simple-ndd-stoch-kern.R tests/sim_tests/test-density_dependence.R tests/spelling.R tests/testthat.R tests/testthat/_snaps/generics.md tests/testthat/helper-funs.R tests/testthat/test-age_size.R tests/testthat/test-define_star_funs.R tests/testthat/test-exported_utils.R tests/testthat/test-general_dd_det.R tests/testthat/test-general_dd_stoch_kern.R tests/testthat/test-general_dd_stoch_param.R tests/testthat/test-general_di_det.R tests/testthat/test-general_di_stoch_kern.R tests/testthat/test-general_di_stoch_param.R tests/testthat/test-generics.R tests/testthat/test-internal_funs.R tests/testthat/test-make_ipm_report.R tests/testthat/test-predict_methods.R tests/testthat/test-simple_dd_det.R tests/testthat/test-simple_dd_stoch_kern.R tests/testthat/test-simple_dd_stoch_param.R tests/testthat/test-simple_di_det.R tests/testthat/test-simple_di_stoch_kern.R tests/testthat/test-simple_di_stoch_param.R tests/testthat/test-sum.R tests/vignettes/MEE_case_study_1.R tests/vignettes/MEE_case_study_2.R tests/vignettes/age_x_size.R tests/vignettes/density-dependence.R tests/vignettes/general-ipms.R tests/vignettes/index-notation.R tests/vignettes/ipmr-intro.R tests/vignettes/test_vignettes.R

vignettes/.gitignore

vignettes/age_x_size.Rmd vignettes/density-dependence.Rmd vignettes/general-ipms.Rmd vignettes/generic-funs.Rmd vignettes/index-notation.Rmd vignettes/ipmr-introduction.Rmd vignettes/proto-ipms.Rmd

levisc8/ipmr documentation built on Feb. 22, 2023, 9:15 p.m.