circle_mQTL: Circular genome-metabolome plot for mQTL.NMR
In lhedjazi/mQTL.NMR: Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
shows mQTL locations and relations with the metabolome on a central chemical axis
Usage
1
circle_mQTL(results, Th = 0, chr = 9, spacing = 25)
Arguments
results
a list containing mQTL mapping results generated by mQTL.NMR package
Th
a numerical parameter specifying LOD threshold
chr
a numerical value defining the chromosomes to show if necessary
spacing
a numerical parameter specifiying the sapcing between chromosomes on the circular genome
Value
A circuler plot where the central horizontal line corresponds to the NMR chemical axis, the circle represents the chromosomal positions, and the colored lines significant association between a shift and genomic location.
Author(s)
Lyamine Hedjazi
See Also
Examples
1
2
3
4
load_datafiles()
load(results)
circle_mQTL(results, Th=8,spacing=0)
lhedjazi/mQTL.NMR documentation built on May 31, 2019, 10:47 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
shows mQTL locations and relations with the metabolome on a central chemical axis
Usage
1 | circle_mQTL(results, Th = 0, chr = 9, spacing = 25)
|
Arguments
results |
a list containing mQTL mapping results generated by mQTL.NMR package |
Th |
a numerical parameter specifying LOD threshold |
chr |
a numerical value defining the chromosomes to show if necessary |
spacing |
a numerical parameter specifiying the sapcing between chromosomes on the circular genome |
Value
A circuler plot where the central horizontal line corresponds to the NMR chemical axis, the circle represents the chromosomal positions, and the colored lines significant association between a shift and genomic location.
Author(s)
Lyamine Hedjazi
See Also
Examples
1 2 3 4 | load_datafiles()
load(results)
circle_mQTL(results, Th=8,spacing=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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