summary_mQTL: Function to summarize the mQTL mapping results of all the...
In lhedjazi/mQTL.NMR: Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.
Usage
1
summary_mQTL(results, redfile,Th = 5)
Arguments
results
a list sepcifying the mQTL mapping results
redfile
a text file containing the parameters of identified clusters(.PPM file)
Th
a numerical paramater indicating the threshold of top accepted score (LOD or -log10(p-value))
Details
Generates a text file containing a table of summary of mQTL mapping results
Value
returns Summaries
Author(s)
Jean-Baptiste Cazier and Lyamine Hedjazi
See Also
Examples
1
2
3
4
5
load_datafiles()
load(results)
Th<-10 ## LOD threshold
summary_mQTL(results,rectangle_SRV,Th)## summarizes mQTL results in a table
lhedjazi/mQTL.NMR documentation built on May 31, 2019, 10:47 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
This function generates a table containing the genetic markers and thier associated metabolomic variables and estimated LOD score.
Usage
1 | summary_mQTL(results, redfile,Th = 5)
|
Arguments
results |
a list sepcifying the mQTL mapping results |
redfile |
a text file containing the parameters of identified clusters(.PPM file) |
Th |
a numerical paramater indicating the threshold of top accepted score (LOD or -log10(p-value)) |
Details
Generates a text file containing a table of summary of mQTL mapping results
Value
returns Summaries
Author(s)
Jean-Baptiste Cazier and Lyamine Hedjazi
See Also
Examples
1 2 3 4 5 | load_datafiles()
load(results)
Th<-10 ## LOD threshold
summary_mQTL(results,rectangle_SRV,Th)## summarizes mQTL results in a table
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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